Computational scientist; biophysicist; bioinformaticist; Ph.D. in Computational Biology

Articles

Fixing multiple monitor position in Ubuntu Gnome 14.04

Upon switching to Gnome 3/Shell I found that my two monitor positions were not persisting after reboot, or even after...

IntroductionGGobi and its R wrapper package (RGgobi) are excellent for exploratory data analysis. One difficulty, how...

MotivationI recently built a tool for calculating and interactively displaying the similarity between climates around...

Simple tk-based GUI for MDSI recently came across some code that Andrew Gelman published on his blog back in 2007 f...

I presented the following video during my thesis defense. It is a visualization of the optimization of the local memb...

There are several ways to write shell script for loops, but I have found their compatibility doesn’t depend only on t...

Image credit: Keith CallenbergMost of these methods are based on the Shrake-Rupley algorithm [1] which creates many...

When I say “easily”, I mean that this method does not require scripting. There is still potentially a lot of guesswor...

In this tutorial we will model the membrane as a low dielectric slab to calculate the ion solvation permeation pathwa...

If while trying to install the NCBI Genome Workbench on Ubuntu 12.10 (quantal) you get the following error:“gbench de...

First post on this newly created site built with Jekyll. Exciting! Hope you find some of the content here interesting...